The current fsfast tutorial does not work with the new version. I'm preparing a new tutorial. Sorry about that.
doug Fernanda Palhano wrote: > Hi, > > I am trying to run the FsFast tutorial, but I am getting the following > error: > > > Fernanda-Palhanos-Mac-Pro:fsfast/fsfast-tutorial/fb1-analysis-study] > fernandapalhano% tkmedit-sess -s mgh-101.1 -a sm-gamma-fwhm5 -c > odd-v-0 -aparc+aseg > tmp: Subscript out of range. > tmp: Subscript out of range. > tmp: Subscript out of range. > tmp: Subscript out of range. > ERROR: cannot find > /Users/fernandapalhano/Data/fsfast/fsfast-tutorial/fb1-analysis-study/mgh-101.1/bold/register.dof6.dat > [Fernanda-Palhanos-Mac-Pro:fsfast/fsfast-tutorial/fb1-analysis-study] > fernandapalhano% tksurfer-sess -s mgh-101.1 -a sm-gamma-fwhm5 -c > odd-v-0 -hemi lh -aparc > tmp: Subscript out of range. > tmp: Subscript out of range. > tmp: Subscript out of range. > tmp: Subscript out of range. > $Id: tksurfer-sess,v 1.15.2.1 2010/07/14 16:08:04 greve Exp $ > Darwin Fernanda-Palhanos-Mac-Pro.local 10.4.0 Darwin Kernel Version > 10.4.0: Fri Apr 23 18:28:53 PDT 2010; root:xnu-1504.7.4~1/RELEASE_I386 > i386 > Mon Jan 10 15:08:15 BRT 2011 > /Applications/freesurfer/bin/tksurfer > > list odd-v-0 > con/map odd-v-0 > /Users/fernandapalhano/Data/fsfast/fsfast-tutorial/fb1-analysis-study/mgh-101.1/bold/sm-gamma-fwhm5/odd-v-0/sig.nii > maplist > /Users/fernandapalhano/Data/fsfast/fsfast-tutorial/fb1-analysis-study/mgh-101.1/bold/sm-gamma-fwhm5/odd-v-0/sig.nii > mri_concat > /Users/fernandapalhano/Data/fsfast/fsfast-tutorial/fb1-analysis-study/mgh-101.1/bold/sm-gamma-fwhm5/odd-v-0/sig.nii > > --o > /Users/fernandapalhano/Data/fsfast/fsfast-tutorial/fb1-analysis-study/mgh-101.1/bold/sm-gamma-fwhm5/tksconcat.nii > ninputs = 1 > Checking inputs > nframestot = 1 > Allocing output > Done allocing > nframes = 1 > Writing to > /Users/fernandapalhano/Data/fsfast/fsfast-tutorial/fb1-analysis-study/mgh-101.1/bold/sm-gamma-fwhm5/tksconcat.nii > ERROR: cannot find > /Users/fernandapalhano/Data/fsfast/fsfast-tutorial/fb1-analysis-study/mgh-101.1/bold/register.dof6.dat > > I checked all the mgh files in fb1-analysis-study and any of them have > register.dof6.dat, there is only register.dat. > Where can I obtain these file? > > Thanks in advance, > Fernanda Palhano > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
