See the usage statement for 'mris_anatomical_stats' below -- just end your command with the surface name (i.e., pial).
Also, you don't need the -t flag (lh.pial is not a thickness file, and thickness is independent of whether stats are computed on the 'white' vs. 'pial' surface). usage: mris_anatomical_stats [options] <subject name> <hemi> [<surface name>] cheers, -MH On Wed, 2011-04-06 at 17:05 +0100, Lena Palaniyappan wrote: > > Hi all > > is it possible to obtain the surface area computations for > each of the parcellations in Destrieux annot from pial instead > of white surfaces? As the vertex addresses are likely to be > different between white and pial surfaces, I suppose the > following command is not appropriate – any ideas? > > mris_anatomical_stats -a aparc.a2009s.annot -t subjid/surf/lh.pial -f > subjid/stats/lh.pialparc.stats subjid lh > > > Lena > > > > > > > This message and any attachment are intended solely for the addressee > and may contain confidential information. If you have received this > message in error, please send it back to me, and immediately delete > it. Please do not use, copy or disclose the information contained in > this message or in any attachment. Any views or opinions expressed by > the author of this email do not necessarily reflect the views of the > University of Nottingham. > > This message has been checked for viruses but the contents of an > attachment may still contain software viruses which could damage your > computer system: you are advised to perform your own checks. Email > communications with the University of Nottingham may be monitored as > permitted by UK legislation. > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
