Hi, I got freesurfer to run with this command:
mri_ca_register -align-after -nobigventricles -mask brainmask.mgz -T ~/Desktop/freeSurfer/CG/mri/transforms/talairach.lta ~/Desktop/freeSurfer/CG/mri/norm.mgz $FREESURFER_HOME/average/RB_all_2008-03-26.gca ~/Desktop/freeSurfer/CG/mri/transforms/talairach.m3z but now have this error after some hours... writing output transformation to /home/virtualuser/Desktop/freeSurfer/CG/mri/transforms/talairach.m3z... GCAMwrite(/home/virtualuser/Desktop/freeSurfer/CG/mri/transforms/talairach.m3z): gzip encountered error. mri_ca_register: GCAMwrite(/home/virtualuser/Desktop/freeSurfer/CG/mri/transforms/talairach.m3z) failed any ideas? I can write to the folder and it has space... Thanks, Vanessa ________________________________ Sent: Friday, 27 May 2011 11:44 a.m. To: freesurfer@nmr.mgh.harvard.edu Subject: mri_ca_register error Hi, I am getting the same error. I did set the environment to an external drive with LOTS of space. When I run it though I did notice it repeats the subject path which is the external drive but then says actual path ~/apps/freesurfer/subjects - this doesn't have much space cause it's a virtualbox and I don't know how to make it bigger. But the error below seems to be pointing to the right directory /home/...Desktop etc. > > GCAMwrite(transforms/talairach.m3z): gzip encountered error. > writing output transformation to transforms/talairach.m3z... > mri_ca_register: GCAMwrite(transforms/talairach.m3z) failed > ERROR: mri_ca_register with non-zero status 252 > but continuing despite the error > #-------------------------------------- > #@# CA Reg Inv Thu May 26 12:42:11 EDT 2011 > /home/virtualuser/Desktop/freeSurfer/CG2/mri > > mri_ca_register -invert-and-save transforms/talairach.m3z > > Loading, Inverting, Saving, Exiting ... > Reading transforms/talairach.m3z > ERROR: cannot find or read transforms/talairach.m3z > ERROR: mri_ca_register with non-zero status 0 > Linux FreeSurfer 2.6.28-11-generic #42-Ubuntu SMP Fri Apr 17 01:57:59 UTC > 2009 i686 GNU/Linux > > Cheers, > Vanessa
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