Carolina Valencia wrote: > Dear FS users, > I would like to use FS to calculate WM hypointensitis (so-called black > holes) for patients with multiple sclerosis, but > 1. I don't know which stat file I should use to report the volumes, > such as total WM, WM hypointensities, etc Use aseg.stats > 2. which editing tool I must use when the lesion is not classified as > WM hypointensities by FS? I know that the control points are not used > or recommended for WM lesions You can use tkmedit as you would for fixing any other area in the aseg volume. Look at the tutorial on this. > 3. Can I use other sequences for detecting other classes of lesions > present in this disease, such as hyperintense T2 lesions (T2WI) or > enhacing lesions on contrast enhaced MR, in order to calculate the > volumes of those, or just the T1 (MPRAGE) We don't have anything for this yet. > 4. which literature do you suggest for the post processing of these > lesions using FS or perhaps another tool? I'm not the one to ask yet. doug > > thanks a lot, > > Carolina > > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
