That's perfect, Doug. Thank you so much! David
-----Original Message----- From: Douglas N Greve [mailto:gr...@nmr.mgh.harvard.edu] Sent: Thursday, November 03, 2011 2:22 PM To: David Grayson Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: Re: [Freesurfer] converting "annotation values" to "label codes" When you created your custom annotation, you passed mris_label2annot a color table. If you numbered the entries in the color table from 1 to N, then the output volume should have values 1000+N (left) and 2000+N (right). You can verify this by loading the seg as both a segmentation and an overlay as I have described before. doug David Grayson wrote: > > Hi, > > > > I have converted a custom-made annotation file to a volume, and now I > am trying to find a table with the labels and their corresponding > label codes (index values which are created when the annotation file > is converted to a volume). I only have the “annotation values” or > color codes for each region, which I found with the read_annotation() > function in matlab. The online wiki states that this color code then > has to be used to look up the label code, but it’s unclear to me how > to do this. > > > > Is there be a table somewhere so that I can cross-reference the color > codes to the label codes? > > > > Thank you, > > > > David > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
