Hi guys, There is an issue with recon-all abending if you use the -expert option on the very first call to recon-all, because recon-all attempts to copy to $subjid/scripts/expert-options before the scripts directory has been created.
As an attempted workaround I manually created an empty $subjid/scripts directory so that the directory already existed. However, in conjunction with the -i flag this then triggers the error of "existing subject" and the -force option no longer exists to force the process to proceed. cheers, -MH -- Michael Harms, Ph.D. -------------------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 Renard Hospital, Room 6604 Tel: 314-747-6173 660 South Euclid Ave. Fax: 314-747-2182 St. Louis, MO 63110 Email: [email protected] -------------------------------------------------------------------- _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
