Hi
Thanks.
Python was the first programing languages that I learned along with Java.
Cheers
Knut Jørgen
On 08. feb. 2012 06:42, Michael Waskom wrote:
Hi,
On the off chance that you are comfortable with Python, you may find
that PySurfer <http://pysurfer.github.com/> provides a more pleasant
scripting environment than the tcl-based TkSurfer interface :)
Best,
Michael
On Tue, Feb 7, 2012 at 12:46 PM, Douglas N Greve
<gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote:
Hi Knut, you can check out my script called tksnap (uses accopanying
mytks.tcl). It will take pics in different orientations. Note: this is
not a supported script, so it's up to you to figure out what it
does and
how it does it. I provide it as a way to help you figure this
stuff out.
If you don't know csh and tcl, then it's not going to be much use to
you. Good luck!
doug
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/tksnap
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mytks.tcl
Knut J Bjuland wrote:
> Hi Bruce
>
>
> Is it possible to use ascript to create a similar figure to the jpg
> file I am attaching?
>
> Knut J
>
>
>
> On 07. feb. 2012 15:09, Bruce Fischl wrote:
>> Hi Knut
>>
>> you can use a tcl script in tksurfer if you want. You are probably
>> better off doing the 10^-log(p) on your own and saving it as a
>> separate overlay. There are plenty of tcl scripts in the
distribution
>> as examples. A simple one would be:
>>
>> set val $home/$subject/label/$hemi.your_overlay.mgz
>> puts "loading overlay $val"
>> sclv_read_binary_values sclv_current_field
>> redraw
>> save_tiff $odir/$hemi.your_overlay.lateral.tif
>> rotate_brain_y 180
>> redraw
>> save_tiff $odir/$hemi.your_overlay.medial.tif
>>
>>
>> put that in a file named something.tcl then load tksurfer with -tcl
>> something.tcl
>>
>> I don't know about the 500dpi though, sorry.
>>
>> cheers
>> Bruce
>>
>>
>>
>> On Tue, 7 Feb 2012, Knut J Bjuland wrote:
>>
>>> I have used Tksurfer to make image from cross subject statistics
>>> maps in
>>> mgh files. Is it possible to use a script to make image with both
>>> hemisphere in lateral and medial view. I would also like to
display p
>>> values as 10^-log(p). Is this possible? Can I use Matlat or
FDR? How
>>> can
>>> I produce image with 500 dpi in tksurfer?
>>>
>>> Knut J
>>> _______________________________________________
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<mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>
>>>
>>>
>>
>>
>> The information in this e-mail is intended only for the person to
>> whom it is
>> addressed. If you believe this e-mail was sent to you in error and
>> the e-mail
>> contains patient information, please contact the Partners
Compliance
>> HelpLine at
>> http://www.partners.org/complianceline . If the e-mail was sent to
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>> but does not contain patient information, please contact the sender
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>>
>>
>>
>
>
>
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>
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>
Phone Number: 617-724-2358 <tel:617-724-2358>
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