Hi Peter
it looks like this is the first error:
GCAMwrite(transforms/talairach.m3z): gzip encountered error.
writing output transformation to transforms/talairach.m3z...
GCAMwrite
GCAMwrite:: m3z loop
GCAMwrite:: the command is: gzip -f -c > transforms/talairach.m3z
GCAMwrite:: the popen error code is: 38
mri_ca_register: GCAMwrite(transforms/talairach.m3z) failed
which corresponds to (in errno.h)
#define ENOSYS 38 /* Function not implemented */
which isn't terribly useful. Is it possibly your file system is full?
Seems like something flakey in NFS. Can you ask a sysadmin to see if there
are any error messages on that file system around the same time?
Bruce
On Thu, 8
Mar
2012, Hellyer, Peter
wrote:
Good Morning, List.
I'm recon-all(ing) a bunch of T1 images using the command recon-all -i
input.nii.gz -subject name -all -sd /path/to/subject/directory
Most of the time, these are running just fine, but occasionally, they are
exiting with error (recon-all.log attached). I don't understand what is
going on, as the input data looks okay and I'm running the same command over
and over (using PBS)?.
Any help would be appreciated.
Best Wishes
Peter
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