You don't need to do that registration. Instead, use --identity xDS with mri_surf2vol. doug
Seok Lew wrote: > Hi, > > After freesurfer reconstruction, I tried to project surface normal > vectors on the ribbon. I used the following scripts, but the > projected vectors were out of the ribbon when I visualized it > freeview. The vectors were placed outside of the ribbon. Anyone > knows any idea ? > > fslregister --mov mri/orig.mgz --s xDS --reg rrr.dat --dof 12 --tmp ./tmp/ > mri_surf2surf --s xDS --hemi lh --sval-nxyz pial --tval ./pl_100.mgz > mri_surf2vol --surfval pl_100.mgz --hemi lh --surf pial --volreg > rrr.dat --outvol pln_pribbon.mgz --fillribbon --template mri/orig.mgz > > > Thank in advance, > > Seok Lew, Ph.D. > MEG Core Laboratory > Athinoula A. Martinos Center for Biomedical Imaging > Massachusetts General Hospital > Harvard Medical School > s...@nmr.mgh.harvard.edu <mailto:s...@nmr.mgh.harvard.edu> > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
