Hi Doug
Thanks. Generated a new one.. its ok now.. Cheers Rajeev *Thu Aug 16 11:18:49 EDT 2012* Hi Rajeev, did you look in that file to see if there is anything in it? You can try regenerating the file with recon-all -s subject -segstats doug On 08/16/2012 08:19 AM, rajeev krishnadas wrote: >* Hi*>* Please help..*>* I am getting this error message on QDEC when trying >to generate stats *>* table.*>**>* /asegstats2table --common-segs --meas >volume --tablefile *>* >/usr/local/freesurfer/subjects/qdec/stats_tables/aseg.volume.stats.dat *>* >--statsfile=aseg.stats --subjects a01 a02 a03 a04 a05 a06 a07 a08 a09 *>* a11 >a12 a13 a14 a15 a16 a17 a18 a19 a20 a21 p01 p03 p04 p05 p07 p08 *>* p09 p10 >p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21/*>* /SUBJECTS_DIR : >/usr/local/freesurfer/subjects/*>* /Parsing the .stats files/*>* /ERROR: The >stats file *>* /usr/local/freesurfer/subjects/a01/stats/aseg.stats is not >found or is *>* too small to be a valid statsfile/*>* /Use --skip flag to >automatically skip bad stats files/*>* /ERROR: In *>* >/usr/pubsw/packages/KWWidgets/CVS-vtk560/KWWidgets/vtkKWTkUtilities.cxx, *>* >line 230/*>* /vtkKWQdecApp (0x2852ad20): /*>* / Script: /*>* /vtkTemp2 >GenerateStatsDataTables/*>* / Returned Error on line 1: /*>* /Uncaught >exception: command failed: asegstats2table --common-segs *>* --meas volume >--tablefile *>* >/usr/local/freesurfer/subjects/qdec/stats_tables/aseg.volume.stats.dat *>* >--statsfile=aseg.stats --subjects a01 a02 a03 a04 a05 a06 a07 a08 a09 *>* a11 >a12 a13 a14 a15 a16 a17 a18 a19 a20 a21 p01 p03 p04 p05 p07 p08 *>* p09 p10 >p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21/*>* /*>* /*>* /Stack trace: /*>* >/Uncaught exception: command failed: asegstats2table --common-segs *>* --meas >volume --tablefile *>* >/usr/local/freesurfer/subjects/qdec/stats_tables/aseg.volume.stats.dat *>* >--statsfile=aseg.stats --subjects a01 a02 a03 a04 a05 a06 a07 a08 a09 *>* a11 >a12 a13 a14 a15 a16 a17 a18 a19 a20 a21 p01 p03 p04 p05 p07 p08 *>* p09 p10 >p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21/*>* /*>* /*>* / while >executing/*>* /"vtkTemp2 GenerateStatsDataTables"/*>**>**>* However, the >aseg.stats file is in place for a01.*>**>* I have run these before, but >recently i ran a hippo-subfields on a01. *>* I wonder if that has anything to >do with this!!*>**>* I wonder if there is a work around.*>**>**>* >Cheerio*>**>**>* -- *>* Dr Rajeev Krishnadas MBBS, MD, DipNB, MRCpsych*>* >Clinical Lecturer*>* Sackler Institute of Psychobiological Research*>* >Southern General Hospital,*>* Glasgow*>* G51 4TF*>**>* >*http://tinyurl.com/67ah4vk**>* *http://tinyurl.com/cwec6mf**
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