Can you please point me to those "tools" ? A link to the relevant website will be highly appreciated. Thanks!
On Sat, Dec 1, 2012 at 9:53 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > Hi Spanier > > definitely don't invoke recon-all with the FLAIR image. We have some tools > in 5.2 for this, but you would call it as a postprocessing step with a > different command line in any case. Instead, you can use bbregister to > register the flair to the surfaces and resample it. > > cheers > Bruce > > > On Sat, 1 Dec 2012, Assaf B. Spanier wrote: > > Hi@all, >> I have a dataset of several MRI T1 images and one Flair. All images of the >> same subject and were taken in the same session. My goal is to register >> and >> segment all those MRI images. >> = A = >> In my first try I have used, "recon-all -i image1 -i image2 etc'" for all >> T1 images (here, I didn't use the Flair images ) . Follow this, I used the >> "recon-all -all" command. (For about two days...) >> >> Here come Question 1: After all this process, I didn't completely follow >> the >> results I got... As I have noticed that I have only one segmentation file >> (aparc.a2009s+aseg.mgz) ? How can I see the segmentation result >> with tkmedit in the different brain images ? >> >> = B = >> As I would like the neuroanatomical labels to be inspected for accuracy >> by a >> physician. My physician asks to see the segmentation result on top of the >> Flair images (saying it easier for him to do so on Flair images) >> So I've used the "recon-all -i image1 -i image2 etc'" command again >> but this time I've also included the Flair image. >> >> Here come Question 2: However, this time, unfortunately, the "recon-all >> -i >> image1 -i image2 etc'" , failed, saying that: >> ~~~~~ >> images have different voxel sizes. Currently not supported, maybe first >> make conform? Debug info: size(1) = 0.5078, 0.5078, 5.5 size(0) = 0.51, >> 0.51, 5.5 >> ~~~~~ >> Is there something I can do to fix this ? >> >> Thanks for everyone involved in this great project! >> Highly appreciate your time and efforts. >> >> Best, >> >> Spanier >> >> >> >> >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. > If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > -- - Assaf We are all - others.
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