It should automatically detect that this was a retinotopy analysis and then load the polar and eccen. Was this configured as a retinotopy analysis? Can you send me the
$ANALYSIS_PHASE/analysis.info file? doug On 12/05/2012 04:12 PM, Julia Foecker wrote: > Hi Doug, > > I tried now several ways to get the maps on the surface: > > 1. When I am deleting -retinotopy flag and type in: > > >>> tksurfer-sess -debug -s $SESSIONNAME -hemi lh -d $SESSIONDIRECTORY >>> -analysis $ANALYSIS_PHASE > I got the message:no contrast has been specified > > (I do not have any contrasts in the analysis, just use polar angle maps) > > > 2. I tried to use the commands on the website you referred to, but I do not > have -surface in the preproc-sess (see attached) > The other commands depend on this preproc-sess command. > > > 3. I tried the following command > paint-sess -s $SESSIONNAME -d $SESSIONDIRECTORY -analysis $ANALYSIS_PHASE > > > and I got the errors listed below... > > I am not sure how to procede. Would you have any further suggestions? > Many thanks, > Julia > > Thanks, > Julia _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
