Hi Jonathan, you'll need the full FreeSurfer 5.2 install in order to run the recon-all script from 5.2. Running the 5.2 recon-all script with 5.0 binaries will not work.
Best Martin On Mon, 2013-01-07 at 13:38 -0500, Jonathan Holt wrote: > Hello all, > > Having a slight issue with recon-all 5.2. For reference, we're using > Freesurfer 5.0.0 and trying to use recon-all 5.2 to alleviate some issues > with disappearing white matter. I'm wondering if it is necessary to have > Freesurfer 5.2 in order for recon-all 5.2 to work properly? > > When I say "crash" I mean it runs to completion after 30 seconds. Log files > are not revelatory. > > best, > jon > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
