Hi all, I am trying to convert Brodmann area 4a and 4p to .nii file format in native space. I have used to following syntax:
tkregister2 --mov ${SUBJECTS_DIR}/mri/rawavg.mgz --noedit --s [SUBJECT_ID] --regheader --reg ./register.dat mri_label2vol --label [PATH-TO-LABEL-FILE] --temp ${SUBJECTS_DIR}/mri/rawavg.mgz --subject [SUBJECT_ID] --hemi lh --o [OUTPUT-FILE-NAME] --proj frac 0 1 .1 --fillthresh .0 --reg [PATH-TO-register.dat-FILE] This is the result: https://dl.dropbox.com/u/6747155/BA4a.png As you can see, there are 'missing' voxels in the volume: it is not one smooth shape. However, when I convert aseg or aparc structures to volumes, I don't have this problem. Is it possible to get a a smooth, fully filled shape from a Brodmann label? Thanks in advance, Vincent
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.