Oh yes. It's my mistake. But should I give the adress of the first file of my set for having the result in .mgz. Thanks.
> Date: Thu, 7 Mar 2013 16:00:53 -0500 > From: gr...@nmr.mgh.harvard.edu > To: pval...@hotmail.com; Freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Time > > You cannot give recon-all a folder as input. It must be an image file. > If you have multiple files, you need multiple -i flags. > doug > > > On 03/07/2013 03:48 PM, Valtina Pouegue wrote: > > Hi, > > Here it is > > [esther@IP132-207-67-224 ~]$ recon-all -i > > /home/esther/Freesurfer/freesurfer/subjects/Patient13B -s 13B > > Subject Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 > > Current Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 > > INFO: SUBJECTS_DIR is /home/esther/Freesurfer/freesurfer/subjects > > Actual FREESURFER_HOME /home/esther/Freesurfer/freesurfer > > Linux IP132-207-67-224 3.4.6-2.fc17.x86_64 #1 SMP Thu Jul 19 22:54:16 > > UTC 2012 x86_64 x86_64 x86_64 GNU/Linux > > /home/esther/Freesurfer/freesurfer/subjects/13B > > > > mri_convert /home/esther/Freesurfer/freesurfer/subjects/Patient13B > > /home/esther/Freesurfer/freesurfer/subjects/13B/mri/orig/001.mgz > > > > mri_convert /home/esther/Freesurfer/freesurfer/subjects/Patient13B > > /home/esther/Freesurfer/freesurfer/subjects/13B/mri/orig/001.mgz > > corRead(): can't open file > > /home/esther/Freesurfer/freesurfer/subjects/Patient13B/COR-.info > > $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ > > reading from /home/esther/Freesurfer/freesurfer/subjects/Patient13B... > > > > VP > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
