you probably want to specify the SUBJECTS_DIR as being somewhere else
that you have write permission to. You can do this with the -sd <path> on
the recon-all command line, or in the environment.
cheers
Bruce
On Thu, 14 Mar 2013,
Varghese Chikku wrote:
Dear FS team,I dowloaded the latest ML version of FS and tried to run a
subject.But this error is coming up.Any suggestions?
chikkuvarghese$ recon-all -i
/Users/chikkuvarghese/Desktop/BL/raw/image00001 -autorecon-all -s BL1
mkdir: /Applications/freesurfer/subjects/BL1: Permission denied
mkdir: /Applications/freesurfer/subjects/BL1/scripts: Permission denied
mkdir: /Applications/freesurfer/subjects/BL1/scripts: Permission denied
cp: /Applications/freesurfer/subjects/BL1/scripts/build-stamp.txt: No such
file or directory
cat: /Applications/freesurfer/subjects/BL1/scripts/build-stamp.txt: No such
file or directory
INFO: FreeSurfer build stamps do not match
Subject Stamp:
Current Stamp: freesurfer-Darwin-lion-stable-pub-v5.2.0
INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects
Actual FREESURFER_HOME /Applications/freesurfer
/Applications/freesurfer/subjects/BL1: No such file or directory.
chikkus-MacBook-Pro:~ chikkuvarghese$
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