Hi, Josh, I think you can run the autorecon1, subcortseg and no segstats if you don't want the statistics file (aseg.stats). Also, use -openmp 8 can speed up quite a lot by multi-threading. For a regular T1 brain image, I can the running time to get aseg.mgz in about 4-5 hours.
recon-all -i subject autorecon1 -subcortseg -nosegstats -openmp 8 cheers, Natalie On Thu, Mar 28, 2013 at 12:33 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > Hi Josh, > > yes, I think that's correct. > > Bruce > On Thu, 28 Mar 2013, Joshua Lee wrote: > > > In fact, couldn't I stop after calabel if all I want is the aseg.mgz? > > - > > Josh > > > > > > On Thu, Mar 28, 2013 at 11:18 AM, Joshua Lee <jki...@ucdavis.edu> wrote: > > Hi All, > > > > Am I right in reading the dev table that if I just want the > > aseg.mgz, (not the stats output), I only need to run auto-recon1 > > and auto-recon2? > > > > I need to run 250+ brains just to get the aseg volume, so if I > > can shave off 4-10 hours off each that would be huge. > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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