Hi Anupa
try loading it as a label, not an overlay (e.g. go into the tkmedit file
menu and load it there). Or you could use freeview:
freeview -v -f /home/mbial/JPJ/freesurfer/SZ01/mri/brain.mgz -l DLPFC.label
cheers
Bruce
On Sun, 21 Apr 2013, Anupa AV wrote:
Dear Ghosh,
I tried to use the overlay command.
>> tkmedit -f /home/mbial/JPJ/freesurfer/SZ01/mri/brain.mgz -overlay DLPFC.label
Kindly check whether the command line is correct or not.
But it's throwing some error.
Error: Loading functional overlay ./DLPFC.label
Couldn't load MRI volume.
Tkmedit couldn't read the functional volume you specified. This could be
because the volume wasn't found or was
unreadable, or because a valid header type couldn't be find, or a registration
file couldn't be found or opened.
__________________________________________________________________________________________________________________________
From: Shantanu Ghosh <shant...@nmr.mgh.harvard.edu>
To: Anupa AV <av.an...@yahoo.com>
Cc: Bruce Fischl <fis...@nmr.mgh.harvard.edu>; Freesurfer
<freesurfer@nmr.mgh.harvard.edu>
Sent: Sunday, April 21, 2013 9:44 AM
Subject: Re: [Freesurfer] Merging the labels to T1 image
Hi Anupa- you can use tkmedit with -overlay flag
shantanu
On Sat, April 20, 2013 10:56 pm, Anupa AV wrote:
> Ok...
> I mean overlaying the label to T1W image
>
>
> ________________________________
> Fm: Bruce Fischl <fis...@nmr.mgh.harvard.edu>
> To: Anupa AV <av.an...@yahoo.com>
> Cc: Freesurfer <freesurfer@nmr.mgh.harvard.edu>
> Sent: Sunday, April 21, 2013 8:09 AM
> Subject: Re: [Freesurfer] Merging the labels to T1 image
>
>
>
> Sorry, I still don't understand. What do you mean by "merge"?
>
>
>
>
> On Apr 20, 2013, at 10:37 PM, Anupa AV <av.an...@yahoo.com> wrote:
>
>
> Dear Bruce,
>>
>>
>>Sorry and to be more precise...
>>After creating a label, say DLPFC, I want to merge it on the subject's T1
>> sagittal section.
>>I'd like to know whether that's possible with FS?
>>
>>
>>
>>________________________________
>> From: Bruce Fischl <fis...@nmr.mgh.harvard.edu>
>>To: Anupa AV <av.an...@yahoo.com>
>>Cc: Freesurfer <freesurfer@nmr.mgh.harvard.edu>
>>Sent: Saturday, April 20, 2013 7:25 PM
>>Subject: Re: [Freesurfer] Merging the labels to T1 image
>>
>>
>>Hi Anupa
>>
>>I'm not sure what you mean, but mri_label2vol might do what you want
>>
>>cheers
>>Bruce
>>On Fri,
>>19 Apr 2013, Anupa AV wrote:
>>
>>> Dear FS experts,
>>> Is it possible to merge the label obtained from tksurfer to T1 weighted
>>> image?
>>>
>>> If yes, which method I should follow?
>>>
>>>
>>_______________________________________________
>>Freesurfer mailing list
>>Freesurfer@nmr.mgh.harvard.edu
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>>
>>
>>The information in this e-mail is intended only for the person to whom it
>> is
>>addressed. If you believe this e-mail was sent to you in error and the
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>>contains patient information, please contact the Partners Compliance
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--
Shantanu Ghosh, Ph.D.
Harvard Medical School & Massachusetts General Hospital
Martinos Center for Biomedical Imaging
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