I input: mris_make_surfaces -dura memprage_echo%d.mgz subjid lh
it returns: detecting dura using 0 echos from memprage_echo%d.mgz Should I execute the command in the same directory as the mgz's? Should they be set up or placed in a specific directory? I also, as with recon-all, exported the proper subject directory beforehand. On May 9, 2013, at 10:37 AM, Bruce Fischl wrote: > can you send me the full command line? It should say 4 echoes, not 0 > On Thu, 9 May 2013, Jonathan Holt wrote: > >> Thanks Bruce, >> >> should the hemisphere's be processed separately, or how do I signify lh and >> rh simultaneously? >> >> Also, should the fact that after running mris_make_surfaces, it says >> "detecting dura using 0 echos from memprage_echo%d.mgz" be worrisome? I've >> got 4 different echos, all mgzs in the directory. I have a feeling I'm doing >> this incorrectly. >> >> jon >> On May 9, 2013, at 8:50 AM, Bruce Fischl wrote: >> >>> Hi Jon >>> >>> yes, the subject and hemi need to be defined (they are required parameters) >>> Bruce >>> On Wed, 8 May 2013, Jonathan Holt wrote: >>> >>>> Hi all, >>>> combed through the mail archives to figure out how to work with multi echo >>>> mprage, found what I need but I wanted to confirm which of these two >>>> commands is the appropriate >>>> mris_make_surfaces -dura memprage_echo%d.mgz 4 subjid lh/rh >>>> mris_make_surfaces -dura memprage_echo%d.mgz do the subjid and hemispheres >>>> need to be specified as per the 1st line? >>>> jon >>>> >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
