thanks Peter, that's actually MNI code, so you might want to report it to them.
Bruce On Wed, 15 May 2013, Peter Wendorff wrote: > -----BEGIN PGP SIGNED MESSAGE----- > Hash: SHA1 > > Hi. > > I'm working with freesurfer as a software developer in a cloud > project. My task is to enable control of freesurfer via network (e.g. > REST interfaces). > > That works fine so far, but I stumbled over the following pearl > deprecated warning: > > "Use of ?PATTERN? without explicit operator is deprecated at > /usr/local/freesurfer//mni/bin/sharpen_volume line 153." > > Which has been printed to the log files repeatingly. I'm not a pearl > expert, but I think, it's due to a more up to date pearl version used > here, that deprecated the usage of ? delimiters for patterns without > explicit operator. > Using / as a delimiter works fine. > > I changed that locally to (new line 153): > > ($output_volume =~ /^([\S]+).mnc/) && ($base_name = $1) || > die "sharpen_volume failed: output volume does not appear to be" > ." a minc volume.\n"; > > (the original code here was): > ($output_volume =~ ?^([\S]+).mnc?) && ($base_name = $1) || > die "sharpen_volume failed: output volume does not appear to be" > ." a minc volume.\n"; > > > > I'm not sure this is the best solution. It's even not strictly > necessary to change this - it's only a warning that's thrown; but I > think, it's useful. > > How can I submit this as a patch? > Is it enough to report here? What to do? > > regards > Peter Wendorff > > P.S.: For referene the header parameters of my sharpen_volume for > revision comparison: > > #---------------------------------------------------------------------------- > > #$RCSfile: sharpen_volume.in,v $ > #$Revision: 1.1 $ > #$Author: bert $ > #$Date: 2003/04/16 14:29:34 $ > #$State: Exp $ > #--------------------------------------------------------------------------- > # ------------------------------ MNI Header > - ---------------------------------- > #@NAME : sharpen_volume > #@INPUT : > #@OUTPUT : > #@RETURNS : > #@DESCRIPTION: modifies intensities so as to produce a sharper histogram > #@METHOD : > #@GLOBALS : > #@CALLS : > #@CREATED : February 28, 1996 > #@MODIFIED : > #----------------------------------------------------------------------------- > -----BEGIN PGP SIGNATURE----- > Version: GnuPG v1.4.11 (GNU/Linux) > Comment: Using GnuPG with Thunderbird - http://www.enigmail.net/ > > iEYEARECAAYFAlGTa5kACgkQi8ffXNvWmYSCUQCghMg1EffqfeJK4PSfo20uF8/J > H0MAnjJc0WbHPf5gLDUw70K8fnQPjS+L > =g+6e > -----END PGP SIGNATURE----- > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
