It doesn't need fixing. Those regions aren't part of cortex and the surfaces are arbitrary there (but excluded from thickness calculations)
On May 28, 2013, at 7:39 PM, Jonathan Holt <whats...@umich.edu> wrote: > Is this normal, attached slide shows a rather common occurrence for me. Half > of the amygdala (blue) is included in pial surface, while the other is not. > How should I go about fixing, the local WM is perfectly fine so I'm not sure > where to start. > > <Screen Shot 2013-05-28 at 7.37.17 PM.png> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.