We use: mri_convert N1029-anat+orig.BRIK freesurfer/mri/orig/001.mgz
where freesurfer is our freesurfer subject folder. On Mon, Jun 3, 2013 at 1:18 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > what is your mri_convert command line? > > On 06/03/2013 02:11 PM, Erin Browning wrote: > > Hi everyone-- > > > > We have a series of scans with an hyperintense artifact cutting > > through the temporal and frontal lobe. When we run mri_convert to > > convert from AFNI .BRIK files to .mgz fles, the results look like the > > attached image. > > > > How can I correct for this? We tried skullstripping in AFNI first to > > remove some of the artifact, but that didn't seem to help very much. > > > > Thank you, > > Erin Browning > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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