Hi Bruce
Thank you for my help, when I use the bbregister, do not know how to choose data for --mov, thanks! Bo At 2013-06-17 20:34:39,"Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: >Hi Bo, > >tksurfer doesn't take a path to a file. Read the help on it - you need to >reconstrcut the subject with recon-all then give it the subject id. To >project a volumetric map onto the surface use mri_vol2surf, with the >registration typically computed by bbregister. > >cheers >Bruce > > >On Mon, 17 Jun 2013, xiangbo_2010 wrote: > >> Hi dougThank you for giving this information, I used the >command: "/tksurfer fsaverage lh inflated -aparc -mni152reg -overlay >/pathname/to/s >> pm/roi/yourfile.img/", but do not have results for me, and do not know how >> to do next? thanks! >> >> >> Bo >> >> >> >> >> >> At 2013-06-06 23:04:30,"Douglas N Greve" <gr...@nmr.mgh.harvard.edu> wrote: >> >Hi Stephanie, I don't know which recommendation you are referring to. We >> >get a lot of emails, and I can't remember each one. Can you repost with >> >the full thread? >> >doug >> > >> > >> >On 06/06/2013 10:40 AM, McMains, Stephanie wrote: >> >> I am wondering why you didn't tell them to go through fsvarege space? >> >> I thought that was an easy way to go from SPM MNI to freesurfer land. >> >> >> >>> /tksurfer fsaverage lh inflated -aparc -mni152reg -overlay /pathname/to/ >> spm/roi/yourfile.img/ >> >> >> >> >> >> I am wondering because when I look at the segmentation for fsaverage, >> >> it seems like it is missing a lot of the gray matter, particularly in >> >> the big sulci, most likely from the 'smoothing' that comes with >> >> averaging subjects together. And therefore I wonder if this is the >> >> best thing to use as an intermediate step. Are you instead suggesting >> >> (as it seemed like in this thread), to put the SPM roi into individual >> >> subject space and then somehow project it to the surface in free surfer? >> >> >> >> Thanks, >> >> Stephanie >> >> >> >> >> >> +++++++++++++++++++++++++ >> >> >> >> Stephanie McMains >> >> Neuroimaging Staff Scientist >> >> Center for Brain Science >> >> Harvard University >> >> 52 Oxford Street >> >> Cambridge, MA 02138 >> >> >> >> +++++++++++++++++++++++++ >> >> For answers to frequently asked questions: >> >> http://cbs.fas.harvard.edu/science/core-facilities/neuroimaging/informati >> on-investigators/faq >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> _______________________________________________ >> >> Freesurfer mailing list >> >> Freesurfer@nmr.mgh.harvard.edu >> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> >-- >> >Douglas N. Greve, Ph.D. >> >MGH-NMR Center >> >gr...@nmr.mgh.harvard.edu >> >Phone Number: 617-724-2358 >> >Fax: 617-726-7422 >> > >> >Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> >FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> >www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> >Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> > >> >_______________________________________________ >> >Freesurfer mailing list >> >Freesurfer@nmr.mgh.harvard.edu >> >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > >> >The information in this e-mail is intended only for the person to whom it i >> s >> >addressed. If you believe this e-mail was sent to you in error and the e-ma >> il >> >contains patient information, please contact the Partners Compliance HelpLi >> ne at >> >http://www.partners.org/complianceline . If the e-mail was sent to you in e >> rror >> >but does not contain patient information, please contact the sender and pro >> perly >> >dispose of the e-mail. >> > >> >> >> >>
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