Hi Mariam, I don't know why it does not read this particular code. I can modify it when I get back from HBM and send you a new version of mri_convert. Or you might be able to change the way you convert from BRIK to use a different slice code. doug
On 6/17/13 4:13 PM, Mariam Sood wrote: > Hello everyone, > > I was trying out FS-FAST tutorial with my set of images (converted to NIFTI > from AFNI BRIK format using 3dAFNItoNIFTI). However, I get this error > 'nifti1Read(): unsupported slice timing pattern 5 in … '. > > Looking at NIFTI.h, this value (#define NIFTI_SLICE_ALT_INC2 5) is added to > cater for acquisition schemes in some siemens scanners (ours is siemens). Why > doesn't Freesurfer like this? > > I looked through the Freesurfer mailing list, but didn't quite find a > solution yet. I am new to whole fMRI analysis, so apologies if I am missing > something obvious. > > Many thanks, > Mariam. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
