Thanks a lot!
On Fri, Jul 12, 2013 at 4:15 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > Hi Amir > > I'm not sure I understand the question. You need to acquire them on each > subject them same way you acquire your MPRAGE/T1-weighted image. Andre van > der Kouwe (ccd) has some sequences you can use on his website if you want > guidance on parameters and such. > > cheers > Bruce > > > > On Fri, 12 Jul 2013, amirhossein manzouri wrote: > > Dear Bruce, >> Would you please explain how and where to acquire FLAIR or T2 images to >> solve the problem? >> BR/Amir >> >> >> On Thu, Jul 11, 2013 at 9:47 PM, ye tian <tianye...@gmail.com> wrote: >> Dear Bruce and Doug, >> Thank you very much! >> >> PS: I searched through my data folder and didn't find T2 images. There >> goes all my afternoon! >> >> Ye >> >> >> On Thu, Jul 11, 2013 at 1:29 PM, Bruce Fischl >> <fis...@nmr.mgh.harvard.edu> wrote: >> the fix is to acquire a FLAIR or T2 image. What you are >> seing is the tentorium of the cerebellum which is very >> difficult to distinguish from cortical gray matter on a >> T1-weighted image. If you don't have either of those >> datasets you probably will need to do manual editing Bruce >> >> On Thu, 11 Jul 2013, ye tian wrote: >> >> Sorry! >> The attachments are really showing the same >> structure, but in different >> views. I have at least a hundred slices which >> include it. Since the pial >> surface is not extending into cerebellum, >> should I just edit brainmask.mgz? >> >> Is there a quicker fix to the problem than >> manual editing? >> >> Thank you very much! >> >> Sincerely, >> Ye >> >> >> On Thu, Jul 11, 2013 at 12:30 PM, Douglas N >> Greve >> <gr...@nmr.mgh.harvard.edu> wrote: >> what do you mean by the structure in the >> circle? The circles are >> pretty big and have a lot of WM and GM >> in them. >> >> On 07/11/2013 12:55 PM, ye tian wrote: >> Dear Doug, >> >> Thank you very much! >> >> Are you basically saying that the >> structure in the circle >> is not part of the cortex? >> >> Sincerely, >> Ye >> >> >> On Thu, Jul 11, 2013 at 11:01 AM, Douglas N >> Greve >> <gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.**edu<gr...@nmr.mgh.harvard.edu> >> >> >> wrote: >> >> yes >> On 07/11/2013 11:22 AM, ye tian wrote: >> > Dear Freesurfers, >> > >> > Do you think I should delete the extra >> dura-like structure >> in the >> > attached case? >> > >> > Thank you very much! >> > >> > Sincerely, >> > Ye >> > >> > >> > >> ______________________________**_________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> >> <mailto:freesur...@nmr.mgh.**harvard.edu<Freesurfer@nmr.mgh.harvard.edu> >> > >> > >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/** >> freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.**edu<gr...@nmr.mgh.harvard.edu> >> > >> Phone Number: 617-724-2358 >> <tel:617-724-2358> >> Fax: 617-726-7422 <tel:617-726-7422> >> >> Bugs: >> >> surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> >> >> <http://surfer.nmr.mgh.**harvard.edu/fswiki/**BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> > >> FileDrop: >> >> https://gate.nmr.mgh.harvard.**edu/filedrop2<https://gate.nmr.mgh.harvard.edu/filedrop2> >> >> >> www.nmr.mgh.harvard.edu/**facility/filedrop/index.html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> >> <http://www.nmr.mgh.harvard.**edu/facility/filedrop/index.** >> html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >> Outgoing: >> >> ftp://surfer.nmr.mgh.harvard.**edu/transfer/outgoing/flat/** >> greve/ <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> >> >> >> ______________________________**_________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> >> <mailto:freesur...@nmr.mgh.**harvard.edu<Freesurfer@nmr.mgh.harvard.edu> >> > >> >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/** >> freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> >> The information in this e-mail is intended >> only for the >> person to >> whom it is >> addressed. If you believe this e-mail was >> sent to you in >> error and >> the e-mail >> contains patient information, please >> contact the Partners >> Compliance HelpLine at >> >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was >> sent to >> you in error >> but does not contain patient information, >> please contact the >> sender and properly >> dispose of the e-mail. >> >> >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: >> >> surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> FileDrop: >> >> https://gate.nmr.mgh.harvard.**edu/filedrop2<https://gate.nmr.mgh.harvard.edu/filedrop2> >> >> www.nmr.mgh.harvard.edu/**facility/filedrop/index.html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> Outgoing: >> ftp://surfer.nmr.mgh.harvard.**edu/transfer/outgoing/flat/** >> greve/ <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> >> >> >> >> >> >> ______________________________**_________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> >> The information in this e-mail is intended only for the person to whom >> it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> >> -- >> Best regards, >> Amirhossein Manzouri >> >> >> >> >> -- Best regards, Amirhossein Manzouri
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
