Many thanks ________________________________________ From: Bruce Fischl [[email protected]] Sent: 22 July 2013 16:31 To: Afaf Elsarraj Subject: RE: [Freesurfer] Average cortical diffusion
can you cc the list so that others can answer and learn from the responses? Put -t <MD sampled to surface> before the mandatory argument On Mon, 22 Jul 2013, Afaf Elsarraj wrote: > > > Thank you for your reply I appreciate it. So when I use the command line: > mris_anatomical_stats [options] <subjectname> <hemi> [<surfacename>]. Do I > need to use (-t) as an option or shall I just put the file name. > > Regards, > Afaf > > > > __________________ > From: [email protected] > [[email protected]] On Behalf Of Bruce Fischl > [[email protected]] > Sent: 22 July 2013 14:09 > To: Afaf Elsarraj > Cc: [email protected] > Subject: Re: [Freesurfer] Average cortical diffusion > > use mri_vol2surf to sample it onto the surface, then give > mris_anatomical_stats the file that it created instead of thickness (-t > <file name>). Everthing it reports as thickness will actually be MD values > instead > > On Mon, 22 Jul 2013, Afaf Elsarraj wrote: > >> >> Hi, >> >> >> >> I’ve registered the mean diffusivity (MD) values on the cortical surface. >> Can you please tell me how to get the average cortical MD of the whole >> hemisphere for each subject, rather than the regional cortical MD. >> >> >> >> Kind regards, >> >> Afaf >> >> >> This message and any attachment are intended solely for the addressee and >> may contain confidential information. If you have received this message in >> error, please send it back to me, and immediately delete it. Please do not >> use, copy or disclose the information contained in this message or in any >> attachment. Any views or opinions expressed by the author of this email do >> not necessarily reflect the views of the University of Nottingham. >> >> This message has been checked for viruses but the contents of an attachment >> may still contain software viruses which could damage your computer system, >> you are advised to perform your own checks. Email communications with the >> University of Nottingham may be monitored as permitted by UK legislation. >> >> >> >> This message and any attachment are intended solely for the addressee and >> may contain confidential information. If you have received this message in >> error, please send it back to me, and immediately delete it. Please do not >> use, copy or disclose the information contained in this message or in any >> attachment. Any views or opinions expressed by the author of this email do >> not necessarily reflect the views of the University of Nottingham. > > This message has been checked for viruses but the contents of an attachment > may still contain software viruses which could damage your computer system, > you are advised to perform your own checks. Email communications with the > University of Nottingham may be monitored as permitted by UK legislation. > > > > > > > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. This message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please send it back to me, and immediately delete it. Please do not use, copy or disclose the information contained in this message or in any attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham. This message has been checked for viruses but the contents of an attachment may still contain software viruses which could damage your computer system, you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation. _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
