Hi,
I am trying to computer the LGI local gyrification index with freesurfer. I
have Matlab on my machine.
I got the following error:
< M A T L A B (R) >
Copyright 1984-2013 The MathWorks, Inc.
R2013a (8.1.0.604) 64-bit (maci64)
February 15, 2013
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Please contact your system administrator or
MathWorks to renew this license.
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For product information, visit www.mathworks.com.
>> loading datas ...
FREESURFER_READ_SURF [v 1.2 ]
...reading surface file: lh.pial
...reading triangle file
...adding 1 to face indices for matlab compatibility.
...done ( 0.03 sec)
FREESURFER_READ_SURF [v 1.2 ]
...reading surface file: lh.pial-outer-smoothed
...reading triangle file
...adding 1 to face indices for matlab compatibility.
...done ( 0.01 sec)
preparing outer mesh structure ...
face 5000 / 128476
face 10000 / 128476
face 15000 / 128476
face 20000 / 128476
face 25000 / 128476
face 30000 / 128476
face 35000 / 128476
face 40000 / 128476
face 45000 / 128476
face 50000 / 128476
face 55000 / 128476
face 60000 / 128476
face 65000 / 128476
face 70000 / 128476
face 75000 / 128476
face 80000 / 128476
face 85000 / 128476
face 90000 / 128476
face 95000 / 128476
face 100000 / 128476
face 105000 / 128476
face 110000 / 128476
face 115000 / 128476
face 120000 / 128476
face 125000 / 128476
mesh_outer =
vertices: [64240x3 double]
faces: [128476x3 double]
facesOfVertex: [64240x1 struct]
preparing pial mesh structure ...
...searching for mesh edges...done (250.55 sec).
... creating path file for vertex 1 / 64240
area file for outer ROIs saved at 1
Improper assignment with rectangular empty matrix.
Error in dsearchn (line 80)
[d(i),t(i)] = min(sum((x-yi).^2,2));
Error in mesh_vertex_nearest (line 29)
nearestIndex = dsearchn(vertices,points);
Error in reorganize_verticeslist (line 28)
[nextindex,nextvalue]=mesh_vertex_nearest(mesh_total.vertices(remaininglist,:),mesh_total.vertices(verticeslist(start_vertex),:));
Error in make_roi_paths (line 93)
reorglist = reorganize_verticeslist (mesh_total, A, mesh_outer, perim,
verticeslist, step);
>>
ERROR: make_roi_paths did not complete successfully!
Darwin iui-MacBook-Pro.local 12.4.0 Darwin Kernel Version 12.4.0: Wed May 1
17:57:12 PDT 2013; root:xnu-2050.24.15~1/RELEASE_X86_64 x86_64
recon-all -s 20130219-01 exited with ERRORS at Tue Jul 30 09:35:07 KST 2013
For more details, see the log file
/Users/jeonghwan/Documents/freesurfer/ADHD-re/20130219-01/scripts/recon-all.log
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Any suggestions to correct my error?
Thanks,
Jeonghwan
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