Thank you Anastasia. Another brain had a different problem: Here is the trac-all log:
mri_concat --i /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//106/dmri/dwi_frame.nii.gz --mean --o /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//106/dmri/lowb.nii.gz niiRead(): error opening file /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//106/dmri/dwi_frame.nii.gz ninputs = 1 Checking inputs ERROR: reading /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//106/dmri/dwi_frame.nii.gz Linux cerebro 2.6.32-358.2.1.el6.x86_64 #1 SMP Wed Mar 13 00:26:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux trac-preproc exited with ERRORS at Wed Aug 7 13:01:21 EDT 2013 thanks so much, Alan On Wed, Aug 7, 2013 at 1:11 PM, Anastasia Yendiki < [email protected]> wrote: > > Hi Alan - Try removing the "\" character from the end of the dcmlist > definition. That's a change of line character. > > > a.y > > On Wed, 7 Aug 2013, Alan Francis wrote: > > Hi Anastasia: >> >> Here is the trac-all log. Please find attached the dmrirc file. >> >> csh::alanf@cerebro [/autofs/space/dali_003/users/** >> BW_project_DTI/FreeSurfer_5.3_**Data/diffusion_recons] : trac-all -prep >> -c /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_** >> Data/diffusion_recons/dmrirc-**107 >> >> Too many ('s. >> ERROR: must specify as many DWI dicoms as subjects >> >> Thank you so much. >> >> Alan >> >> >> On Wed, Aug 7, 2013 at 12:32 PM, Anastasia Yendiki < >> [email protected]> wrote: >> >> Yes, please attach the dmrirc and trac-all.log. Thanks! >> >> a.y >> >> On Wed, 7 Aug 2013, Alan Francis wrote: >> >> Hi Anastasia: >> >> For one brain I got this error message : >> >> csh::alanf@cerebro >> [/autofs/space/dali_003/users/** >> BW_project_DTI/FreeSurfer_5.3_**Data/diffusion_recons] : trac-all >> -prep >> -c /autofs/space/dali_003/users/** >> BW_project_DTI/FreeSurfer_5.3_**Data/diffusion_recons/dmrirc-**107 >> >> Too many ('s. >> ERROR: must specify as many DWI dicoms as subjects >> >> I tried specifying the exact number of DWI dicoms but it is >> not working. Should I send you my >> dmrirc for this brain? >> >> thanks, >> >> Alan >> >> >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent to you in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> >> >>
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