Thanks a lot!

On Mon, Sep 23, 2013 at 3:05 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote:

> Hi Amirhossein
>
> as long as the surfaces are correct (yellow and red lines), then you don't
> need to worry about the segmentation, as it is the surfaces that define the
> thickness
>
> cheers
> Bruce
>
> On Mon, 23 Sep 2013, amirhossein manzouri wrote:
>
>  Hi,
>> In the attached Slice image of a processed brain, there is a yellow line
>> which defines the WM and red line for the cortex but in segmentation some
>> WM
>> have been segmented as cortex and some part of cortex have not been
>> segmented ! Would you please let me know how to handle the situation
>> while I
>> am reporting cortical thicknesses of my data?
>>
>> --
>> Best regards,
>> Amirhossein Manzouri
>>
>>
>>
>>
>>
>>
>
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-- 
Best regards,
Amirhossein Manzouri
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