Try it with --thmin 0.5 doug On 10/15/2013 11:34 AM, maria estanqueiro wrote: > Dear all, > > I need the center coordinates of the anatomical labels from the > desikan and destrieux atlases. > > I saw a similar post a while ago in which it was recommended the > following: > > #1 Convert the annotation to a set of labels. This is for the > Desikan atlas, but you can spec the destrieux instead > mri_annotation2label --subject fsaverage --hemi lh --outdir > ~/tmp/aparc > > # For each label, run mri_surfcluster to get the centroid > mri_surfcluster --in ~/subjects/fsaverage/surf/lh.thickness > --clabel lh.pericalcarine.label --sum sum.lh.pericalcarine > --centroid --thmin 0 --hemi lh --subject fsaverage > > I did the last step step for 2 different labels, one in the temporal > and the other in the occipital cortex. However, the coordinates that > were generated in the sum files were the same. > > Does anyone know why? Is this the right procedure for what I want to do? > > Thanks! > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
