There is not a single command to do it, but you could do something like mri_binarize --i aparc+aseg.mgz --wm --o wmmask.mgz # mask of white matter mri_binarize --i seg.mgz --match 17 --o mask17.mgz # mask of seg 17 mri_binarize --i seg.mgz --match 17 --dilate 2 --o mask17.dil2.mgz # mask of seg 17 dilated by 2 voxels fscalc wmmask.mgz and mask17.dil2.mgz --o mask17.dil2.wm.mgz # seg 17 inside WM mri_concat mask17.mgz mask17.dil2.wm.mgz --sum --o mask17+wm.mgz # seg 17 plus dilation into WM
doug On 11/04/2013 11:38 AM, Corinna Bauer wrote: > Hello all, > Is there a way to expand a GM label into the white matter by n voxels? > > Corinna > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
