Hi Noel
what were the acquisitions? If they were multi-echo mprage than you will
either have to generate the RMS or find the series that is the RMS (since
it should have been generated automatically)
cheers
Bruce
On Tue, 10 Dec 2013, Chan, Noel Yan-Ki,Ph.D.
wrote:
Hi,
I'm trying to do recon-all for a file, and it gave me this multiple frame
error message:
#@# MotionCor Mon Nov 25 13:11:40 EST 2013
Found 1 runs
/autofs/cluster/lazar/projects/Noel/SUBJECTS_DIR/BHI_BJU-345_pre_lazar/mri/
orig/001.mgz
Checking for (invalid) multi-frame inputs...
ERROR: input(s) cannot have multiple frames!
/autofs/cluster/lazar/projects/Noel/SUBJECTS_DIR/BHI_BJU-345_pre_lazar/mri/
orig/001.mgz has 4 frames
If this is a multi-frame MEMPRAGE image,
use mri_concat --rms to combine echo frames.
Linux compute-0-73 2.6.32-358.23.2.el6.x86_64 #1 SMP Wed Oct 16 18:37:12 UTC
2013 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s BHI_BJU-345_pre_lazar exited with ERRORS at Mon Nov 25 13:11:47
EST 2013
For more details, see the log
file/autofs/cluster/lazar/projects/Noel/SUBJECTS_DIR/BHI_BJU-345_pre_lazar/scri
pts/recon-all.log
To report a problem,
see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
May I ask what should I do to solve this problem?
There are actually two files which give me the same error message:
BHI_BJU-345_pre_lazar (pbsjob_30) and BHI_JJA-329_pre_lazar (pbsjob_33)
Thanks,
Noel ---
Noel Yanki Chan, PhD
Department of Psychiatry Neuroscience
Laboratory of Sara Lazar, PhD
Harvard Medical School
Massachusetts General Hospital
Building 120, 2nd avenue, Suite 103
Charlestown, MA 02129
Tel: 617-643-5078 (lab) 607-229-7096 (cell)
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