Hi Rashmi
how did you create this dataset? The non-black background is probably
going to cause trouble. Is it an mp2rage or something similar? Could you
try replacing the background value (386.997) with 0 and see if that helps.
If there are really big defects the topology fixer will take forever, and
probably won't generate the correct solution anyway
cheers
Bruce
On Tue, 7 Jan 2014, Rashmi Singh wrote:
Hello FreeSurfer experts,
I am having problem with running reconall.
I am using version 5.1.
Attached is data set on which I ran reconall.
Because I was getting tailrace failure I ran it with –notal-check flag( the
run with -use–mritotal flag failed too, so I used the –notal check flag )
Recon all ran OK, but its has got stuck at a point (topology detection
stage) and its not moving forward (my terminal shows that its still running)
May you please help me troubleshoot this issue.
Thanks,
Rashmi
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