The dimension mismatch means that the input data does not match the surface. It looks like the surface is from an individual but the input data is from a group analysis (which means fsaverage subject)
On 01/23/2014 02:35 PM, Thiago Junqueira wrote: > Dear FreeSurfers > I am having some troubles to run step 4 of protocol to thickness > reproducibility. The error message is below: > nf04:~> mris_surface_stats -nsmooth 100 -surf_name > /home/nf04/subjects/t_pac01/su > > rf/lh.white -out_name > > /home/nf04/subjects/groupstudy/lh_std_60.mgh -absmean > /home/nf04/subjects/groupstudy/lh_absmean_60.mgh -mean > /home/nf04/subjects/groupstudy/lh_mean_60.mgh -absstd > /home/nf04/subjects/groupstudy/lh_absstd_60.mgh > > /home/nf04/subjects/groupstudy/tpac02_lh_thicknes_diff_resampled_to_tpac01.mgh > Perform 100 steps of smoothing of input data > using /home/nf04/subjects/groupstudy/lh_std_60.mgh as output file > using /home/nf04/subjects/groupstudy/lh_absmean_60.mgh as > output file for > abs-mean > using /home/nf04/subjects/groupstudy/lh_mean_60.mgh as output > file for mean > using /home/nf04/subjects/groupstudy/lh_absstd_60.mgh as > output file for > std-of-abs-mean > reading > > /home/nf04/subjects/groupstudy/tpac02_lh_thicknes_diff_resampled_to_tpac01.mgh... > Smooth input data by 100 steps > ERROR: MyMRISsmooth: Surf/Src dimension mismatch > Stats over surface (76117 vertices): mean = 0.368766, std = > 1.02826, > absmean = 0.790395, absstd = 0.754038 > > I would appreciate so much any help. > > Many thanks > > Thiago Junqueira > Medical Physicist, Msc Student in Neuroimage > Neuroimage Lab and Medical Physics Lab > University of Campinas > Phone: +55 19 8809-9476 > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
