It looks like that file is corrupted. Is this disk full? On 02/19/2014 05:21 PM, Victor Kovac wrote: > Hi Doug. > > This is the output: > $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ > reading from /lustre/kovacv/FS/post_analysis/MPS2005-2/mri/rawavg.mgz... > mghRead(/lustre/kovacv/FS/post_analysis/MPS2005-2/mri/rawavg.mgz): > could not read 131072 bytes at slice 150 > > I was wondering if it might be that the dicom file corresponding to > slice 150 was corrupted, so I checked slice 150 in the sagittal plane, > but I see no error. > > Please advise. > > Thanks! > Victor > > > On Wed, Feb 19, 2014 at 3:48 PM, Douglas N Greve > <[email protected] <mailto:[email protected]>> wrote: > > The log file you sent shows recon-all failing at a very early > point before the issue with the PV spaces could become a problem. > It appears to fail at this command-line. > > mri_convert > /lustre/kovacv/FS/post_analysis/MPS2005-2/mri/rawavg.mgz > /lustre/kovacv/FS/post_analysis/MPS2005-2/mri/orig.mgz --conform > > Can you run this and post the terminal output to the list > > > > On 02/19/2014 12:08 PM, Victor Kovac wrote: > > Hello FreeSurfer experts, > > > > I have four scans from a subject who has ubiquitous, dilated > > perivascular spaces (image attached) that seem to be preventing > > recon-all from finishing. I have attached the recon-all.log from one > > of the scans. > > > > Any advice on what I could try to get these scans analyzed would be > > greatly appreciated. > > > > Thank you! > > Victor > > > > > > _______________________________________________ > > Freesurfer mailing list > > [email protected] > <mailto:[email protected]> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > [email protected] <mailto:[email protected]> > Phone Number: 617-724-2358 <tel:617-724-2358> > Fax: 617-726-7422 <tel:617-726-7422> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > [email protected] <mailto:[email protected]> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > >
-- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
