Hi doug,
Thanks doug.
I am sorry to describe my question no very clearly.It did work,but I
want to view time course of lh.score.thickness.00.mgh vertex by
vertex. So I need to try -v option to view time course manually as
you just told me. However I cannot view anything but darkness when I
try ""freeview -v lh.score.thickness.00.mgh"". Is there any tool or
method to present a time course window(or a colume of numbers) when I
click one voxel or vertex. And numbers in time course window will
change when I click other voxel or vertex.
Thanks,
All the best.
Rujing Zha
2014-02-27
------------------------------------------------------------------------
charujing123
------------------------------------------------------------------------
*发件人：*Douglas N Greve <gr...@nmr.mgh.harvard.edu>
*发送时间：*2014-02-27 01:51
*主题：*Re: [Freesurfer] time course in mri_info
lh.gender_age.thickness.10.mgh
*收件人：*"freesurfer"<freesurfer@nmr.mgh.harvard.edu>
*抄送：*
Try this
freeview -f
$SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=$SUBJECTS_DIR/glm/lh.score.thickness.00.mgh
Don't use -v in this case because -v is for a volumes and volume
overlays and all your data are surface overlays
On 02/25/2014 08:38 PM, charujing123 wrote:
> Hi doug and others,
> It will be highly appreciated,if anyone can help me.
> Thanks.
> All the best.
> Rujing Zhas
> 2014-02-26
> ------------------------------------------------------------------------
> charujing123
> ------------------------------------------------------------------------
> *发件人：*"charujing123"<charujing...@163.com>
> *发送时间：*2014-02-25 12:01
> *主 题：*Re: [Freesurfer] time course in mri_info
> lh.gender_age.thickness.10.mgh
> *收件人：*"freesurfer@nmr.mgh.harvard.edu"
<freesurfer@nmr.mgh.harvard.edu>
> *抄送：*
> Hi doug,
> When I try to do this by "freeview -f
> $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=$SUBJECTS_DIR/glm/lh.score.thickness.00.mgh
> -v lh.score.thickness.00.mgh" or "freeview -v
> lh.score.thickness.00.mgh", it did create a window of time course.
> However there is nothing in the freeview window except
> darkness((i.e.fig1 in the attachment)). By the way, I can see
> something by "freeview -f
> $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=$SUBJECTS_DIR/glm/lh.score.thickness.00.mgh"(i.e.fig2
> in the attachment). All of these can be got in the attachment.
> Thanks.
> All the best.
> Rujing Zha
> 2014-02-25
> ------------------------------------------------------------------------
> charujing123
> ------------------------------------------------------------------------
> *发件人：*"charujing123"<charujing...@163.com>
> *发送时间：*2014-02-25 10:28
> *主 题：*Re: [Freesurfer] time course in mri_info
> lh.gender_age.thickness.10.mgh
> *收件人：*"freesurfer@nmr.mgh.harvard.edu"
<freesurfer@nmr.mgh.harvard.edu>
> *抄送：*
> Thanks doug
> All the best.
> Rujing Zha
> 2014-02-25
> ------------------------------------------------------------------------
> charujing123
> ------------------------------------------------------------------------
> *发件 人：*Douglas N Greve <gr...@nmr.mgh.harvard.edu>
> *发送时间：*2014-02-25 00:31
> *主 题：*Re: [Freesurfer] time course in mri_info
> lh.gender_age.thickness.10.mgh
> *收件 人：*"freesurfer"<freesurfer@nmr.mgh.harvard.edu>
> *抄送：*
> On 02/23/2014 08:32 PM, charujing123 wrote:
> > Hi all,
> > I have two questions.
> > 1,If I want to get the value of specific voxel from the
> > lh.gender_age.thickness.10.mgh, which code can I use to perform it?
> You can go to that vertex when you have it loaded into FreeView,
> otherwise you can load it into matlab (MRIread.m). Make sure to account
> for the fact that matlab uses 1-based indices whereas FS uses 0-based.
> > 2,How to graph the time course of specfic voxel from the
> > lh.gender_age.thickness.10.mgh by freeview?
> Add "-v lh.gender_age.thickness.10.mgh" to your freeview command line
> > Thanks.
> > All the best.
> > Rujing Zha
> > 2014-02-24
> >
> ------------------------------------------------------------------------
> > charujing123
> >
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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