Sorry, I wasn't clear. It's a cortical label that I manually created, based on the pial surface.
Is it possible to generate the corresponding WM vol based on a new label (not pre-defined)? -- Daniel (Yung-Jui) Yang, Ph.D. Postdoctoral Researcher Yale Child Study Center New Haven, CT Tel: (203) 737-5454 E-mail: [email protected] On 3/3/14 2:17 PM, "Douglas N Greve" <[email protected]<mailto:[email protected]>> wrote: I don't understand. What label do you have? Do you mean a WM label or a cortical label that you want to find the WM under? On 03/03/2014 02:12 PM, Yang, Daniel wrote: Hi Doug, I am able to find wmparc.stats in stats. It shows WM vol based on pre-defined ROIs. However, do you know how can we generate corresponding WM vol for a given label (not the D-K ROIs)? I'd like to use WM vol as DV but are limited to pre-defined ROIs. Best, Daniel -- Daniel (Yung-Jui) Yang, Ph.D. Postdoctoral Researcher Yale Child Study Center New Haven, CT Tel: (203) 737-5454 E-mail: [email protected]_<mailto:[email protected]_> On 3/3/14 1:14 PM, "Douglas N Greve" <[email protected]<mailto:[email protected]> <mailto:[email protected]>> wrote: It should be there if the recon did not fail. The file is called wmparc.stats (not wmparc_stats.txt) On 03/03/2014 01:07 PM, Yang, Daniel wrote: Thanks, Doug! But that is about using wmparc.stats as IV or continuous/covariate variables. I would like to use WM vol as the DV (measure). -- Daniel (Yung-Jui) Yang, Ph.D. Postdoctoral Researcher Yale Child Study Center New Haven, CT Tel: (203) 737-5454 E-mail: [email protected]_<mailto:[email protected]_> <mailto:[email protected]_> On 3/3/14 12:58 PM, "Douglas N Greve" <[email protected]<mailto:[email protected]> <mailto:[email protected]> <mailto:[email protected]> <mailto:[email protected]%3E>> wrote: you can just add them into your qdec file (from wmparc.stats) doug On 03/02/2014 07:18 PM, Yang, Daniel wrote: Dear FreeSurfer Experts, FS provides thickness as the DV in qdec and mri-glmfit. Do you know how I can have WM vol as the DV in these tools with the same GLM model? For example, I want to test the WM regions that is most strongly positively correlated with a given factor. Thanks! Daniel _______________________________________________ Freesurfer mailing list [email protected]<mailto:[email protected]> <mailto:[email protected]> <mailto:[email protected]> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected]<mailto:[email protected]> <mailto:[email protected]> <mailto:[email protected]> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list [email protected]<mailto:[email protected]> <mailto:[email protected]> <mailto:[email protected]> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected]<mailto:[email protected]> <mailto:[email protected]> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected]<mailto:[email protected]> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
