problem with surf2surf is it deals with scalar fields ( data ) so don't think that will do it.
problem with label2label is that it deals with a single label which has a diferent structure than anot. so a way to do it 1. mri_annotation2label ... to convert the yeo anotation file to individual labels 2. mri_label2label ... to map each label from the fsaverage space to the individual subject space 3. then the function that takes the labels on the individual subject space and makes a .annot of it in indiv. subject space. you will need to supply a colormap table to, don't remember the name ( google freesurfer make annotation file, or something like that) seems like a lot of work but just make a little script and you only need to figure it out once. if any problems i could dig in my notes, i did not find one function to map a .annot in 1one space to a .annot in another. gref On 03/10/14, Thomas Yeo wrote: > Hi Jeff, > > I am a little unsure myself since I usually work with data mapped to > fsaverage space. I think you might want to use mri_surf2surf, since > there's a "--sval-annot" option. It's hard for me to check now because > I am away at a conference. > > Can someone chime in if mri_surf2surf is wrong? > > Thanks, > Thomas > > > > > > On Mon, Mar 10, 2014 at 10:59 AM, Jeff Eriksen <eriks...@ohsu.edu> wrote: > > What I need are the ?h.Yeo.annot files for the individual subjects, similar > > to the default ?h.aparc.annot and ?h.aparc.2009.annot files. Will > > mri_label2labe give me that directly? > > > > Thanks, > > -Jeff > > > > > > -----Original Message----- > > From: Bruce Fischl > > [mailto:fis...@nmr.mgh.harvard.edu](javascript:main.compose() > > Sent: Monday, March 10, 2014 9:50 AM > > To: Jeff Eriksen > > Cc: 'freesurfer@nmr.mgh.harvard.edu' > > Subject: Re: [Freesurfer] applying Yeo atlas to individual brains > > > > Hi Jeff > > > > you should be able to use mri_label2label to map the Yeo atlas from > > fsaverage to any subject. > > > > cheers > > Bruce > > On Mon, 10 Mar 2014, Jeff Eriksen wrote: > > > >> > >> Our lab has a need to apply the Yeo atlas to individual brains. As I > >> understand it, Yeo atlas is only currently available for the FSAverage > >> brain. Any plans to incorporate Yeo on to the default FS segmentation, > >> or have it available as an option? > >> > >> > >> > >> -Jeff Eriksen > >> > >> > >> > >> > >> > > > > > > The information in this e-mail is intended only for the person to whom it > > is addressed. If you believe this e-mail was sent to you in error and the > > e-mail contains patient information, please contact the Partners Compliance > > HelpLine at http://www.partners.org/complianceline . If the e-mail was sent > > to you in error but does not contain patient information, please contact > > the sender and properly dispose of the e-mail. > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
