YES! Started to work. Thanks Doug!
> use > -nuisreg mcprextreg 3 > > On 03/19/2014 11:34 AM, sha...@nmr.mgh.harvard.edu wrote: >> I used "-nuisreg mcprextreg" in mkanalysis-sess. Got this error: >> >> Error: -nuisreg requires two arguments" >> >> >> >>> -nuisreg >>> >>> On 03/19/2014 11:24 AM, sha...@nmr.mgh.harvard.edu wrote: >>>> Does not accept "-nuis" flag. I changed my mkanalysis-sess to this: >>>> >>>> mkanalysis-sess -analysis ColorPrj_TR4_1p5mm_PR_ANOVA -fwhm 1.5 >>>> -paradigm >>>> Conds.par -native -event-related -polyfit 2 -gammafit 2.25 1.25 -nuis >>>> mcprextreg -TR 4 -nconditions 8 -refeventdur 14 -force -fsd bold_Color >>>> -per-run >>>> >>>> and got this error: >>>> >>>> ERROR: Flag -nuis unrecognized. >>>> >>>> >>>> >>>>> I think it is just confused because it expects native to be >>>>> per-session. >>>>> One way around this is to just specify -nuis mcprextreg instead of >>>>> -mcprextreg >>>>> doug >>>>> >>>>> >>>>> On 03/19/2014 11:15 AM, sha...@nmr.mgh.harvard.edu wrote: >>>>>> But this is a per-run analysis and preproc-sess is -per-run (in >>>>>> native >>>>>> space). I assumed that I have to change my mkanalysis-sess to this: >>>>>> >>>>>> mkanalysis-sess -analysis ColorPrj_TR4_1p5mm_PR_ANOVA -fwhm 1.5 >>>>>> -paradigm >>>>>> Conds.par -native -event-related -polyfit 2 -gammafit 2.25 1.25 >>>>>> -mcprextreg -TR 4 -nconditions 8 -refeventdur 14 -force -fsd >>>>>> bold_Color >>>>>> -per-run >>>>>> >>>>>> >>>>>> But using -mcprextreg flag generates an error. Is it a bug? >>>>>> >>>>>> >>>>>>> There is not an mcextreg file there. There is mcprextreg file. I >>>>>>> think >>>>>>> you need to run preproc with -per-session to get the mcextreg file >>>>>>> doug >>>>>>> >>>>>>> On 03/18/2014 02:34 PM, SHAHIN NASR wrote: >>>>>>>> Hi, >>>>>>>> When I run selxavg3-sess, I face this error: >>>>>>>> >>>>>>>> ERROR: cannot find volume matching >>>>>>>> /autofs/cluster/tootell/pitcairn/1/shahin/ColorPrj/7T/Sbj/myla2/bold_Color/013/mcextreg >>>>>>>> ERROR: loading nonpar reg >>>>>>>> /autofs/cluster/tootell/pitcairn/1/shahin/ColorPrj/7T/Sbj/myla2/bold_Color/013/mcextreg >>>>>>>> ------------------------------------------ >>>>>>>> ERROR: fast_selxavg3() failed\n >>>>>>>> >>>>>>>> I repeated the preproc-sess from scratch and it worked fine, >>>>>>>> finished without any problem and I still get the same error. I >>>>>>>> even >>>>>>>> check the registration in this run and it fine. >>>>>>>> >>>>>>>> Now I am wondering why do I see this error for this subjects >>>>>>>> (and >>>>>>>> why I don't see it for the other subjects)? >>>>>>>> >>>>>>>> Regards >>>>>>>> -- >>>>>>>> Shahin Nasr >>>>>>>> >>>>>>>> PhD in Cognitive Neuroscience >>>>>>>> Martinos Imaging Center, MGH >>>>>>>> Harvard Medical School >>>>>>> -- >>>>>>> Douglas N. Greve, Ph.D. >>>>>>> MGH-NMR Center >>>>>>> gr...@nmr.mgh.harvard.edu >>>>>>> Phone Number: 617-724-2358 >>>>>>> Fax: 617-726-7422 >>>>>>> >>>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>> Outgoing: >>>>>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>>>> >>>>>>> >>>>>>> >>>>> -- >>>>> Douglas N. Greve, Ph.D. >>>>> MGH-NMR Center >>>>> gr...@nmr.mgh.harvard.edu >>>>> Phone Number: 617-724-2358 >>>>> Fax: 617-726-7422 >>>>> >>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>> Outgoing: >>>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>> >>>>> >>>>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: >>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> >>> >>> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
