try it like this recon-all -s 002 -expert 002/scripts/expert.opts -xopts-overwrite
On 03/20/2014 12:30 AM, Michael Green wrote: > I've been calling up an expert options file which contains the text > "mri_normalize -gentle" but I'm having trouble executing it with this > command: > > "recon-all -s 002 -expert 002/scripts/expert.opts" > > It results in the following error: > > ERROR: there is a pre-existing expert options file and > you have specified an expert options file on the command-line. > If you want to use the file specified on the command-line, > you must run with -xopts-overwrite, or you may edit the > existing file > /mridata/workingdata/INS/subjects/002/scripts/expert.opts (and not use > the -expert option). > > The help message is a little confusing (and not use the -expert > option) but executing > > "recon-all -s 002 -xopts-overwrite 002/scripts/expert.opts" > > gives me the following error: > > ERROR: Flag 002/scripts/expert.opts unrecognized. > > Any ideas or help on this one? > > > -- > > Michael Green > Senior Research Officer > Lecturer, UNSW > > Neuroscience Research Australia > > Neuroscience Research Australia > Margarete Ainsworth Building > Barker Street Randwick Sydney NSW 2031 Australia > *T* +61 2 9399 1086 > > neura.edu.au <http://neura.edu.au> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
