Hello Bruce, I am referring to link
http://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness to calculate the cortical thickness of particular area such as Left hippocampus for our own data set. But i am looking for forward to generate lh.thickness file in freesurfer for own data set which can be used as overlay. (Used for surface to surface overlay) Can u suggest how to generate lh.thickness file for my own data using freesurfer...? Thanks in advanced. cheers Saurabh Thakur, On Tue, Mar 11, 2014 at 10:28 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > try configure->functional overlay or something like that after loading the > thickness into a functional overlay > > On Tue, 11 Mar 2014, Saurabh Thakur wrote: > > I am referring one paper. >> It mentioned about the freesurfer and cortical thickness they hv got in >> tksurfer. >> >> I m just want to know how to get that done in tksurfer. >> >> I hv attached that paper for the reference. >> >> cheers >> Saurabh Thakur, >> >> >> >> >> >> >> On Tue, Mar 11, 2014 at 7:14 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu >> > >> wrote: >> what is it that you want to histogram? If the thickness, >> tksurfer will do >> this for you if you load it as an overlay. Or you can read it >> into matlab >> and show it there >> >> On Tue, 11 Mar 2014, Saurabh Thakur >> wrote: >> >> > Hello Freesurfer Expert, >> > >> > Can anyone help me with histogram plotting of different >> surfaces in >> > tksurfer. >> > >> > I looking to calculate the thickness of cortex. >> > >> > Thanks in advance, >> > >> > >> > Saurabh Thakur, >> > >> > >> > >> > >> > >> > >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom >> it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> >>
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