Hi Omar, there is a bug in that version off mni152reg. Use the version in dev instead doug
On 04/03/2014 03:50 PM, Omar Singleton wrote: > Hi Freesurfers, > > I am trying to convert a volume from MNI152 to subject space. I tried to > do what this previous question suggested: > > https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2013-December/034722.html > > I tried to create a registration matrix from subject space to MNI152: > > mni152reg --s AL15 > > However, this error appeared: > > ... > mkdir: cannot create directory > `/usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.28345': > Permission denied > ... > writing to > /usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.28345/refvol.fslregister.nii... > ERROR: failure writing > /usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.28345/refvol.fslregister.nii > > > I would then have used this command: > > mri_label2vol --seg lh.AItou.nii.gz --reg > AL15/mri/transforms/reg.mni152.2mm.dat --invertmtx --o > lh.aitou.AL15.nii.gz --temp AL15/mri/orig.mgz > > How can I make the mni152reg command work? Is this the correct way to do > this? > > Thanks! > > Best, > Omar > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
