Thank you Zeke, What about these?
/usr/local/freesurfer/bin/bet.fsl /usr/local/freesurfer/bin/flirt.fsl /usr/local/freesurfer/bin/slicetimer.fsl They are not there neither compared to the ubuntu install. Best, Markus 2014-04-04 19:05 GMT+02:00 Z K <zkauf...@nmr.mgh.harvard.edu>: > There are 3 missing fsl files from the OSX snow leopard installation. > They can be downloaded from here: > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/zkaufman/fsl > > Copy them into your "$FREESURFER_HOME/bin" directory. > > -Zeke > > > > On 04/04/2014 12:32 PM, Markus Gschwind wrote: > > Dear Freesurfers, > > > > As discovered here, > > > > http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg35160.html > > > > it seams that some Mac OSX installations suffered from incomplete files. > > > > I just veryfied that I had downloaded the complete image and wget says > yes: > > > > Logging in as anonymous ... Logged in! > > ==> SYST ... done. ==> PWD ... done. > > ==> TYPE I ... done. ==> CWD (1) /pub/dist/freesurfer/5.3.0 ... > done. > > ==> SIZE freesurfer-Darwin-snowleopard-i686-stable-pub-v5.3.0.dmg > > ... 3394499614 > > File has already been retrieved. > > 2014-04-04 18:24:26 (0.00 B/s) - > > 'freesurfer-Darwin-snowleopard-i686-stable-pub-v5.3.0.dmg' saved > > [3394499614] > > > > > > So this is what I installed recently and it seems that there are some > > files missing (at least some of the fsl-functions in bin). > > > > Doug, you said that you suspected that it could be a problem of the > > installer script? > > > > What should we do (also Eiran) in order to complete the installation? > > > > Thanks for you work! > > Markus > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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