On Friday, April 18, 2014 11:43 PM, shahrzad kharabian 
<shahrzad_k...@yahoo.com> wrote:
 
Dear experts, 

I have a encountered an Error while doing skull-stripping using freesurfer on 
my T1 weighted images, using mri_watershed

I am using the following command:

mri_watershed -atlas mprage_RPI.mgz mprage_skullstrip.mgz

and here is the error:

mri_watershed Error: 
w=White Matter =Intensity too high (>240)...valid input ?

I checked the images, actualy White matter intensity is around 300 . 


How could I overcome this issue?


Bests, 

S.
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