Hi Bruce, Yes, that's exactly what I needed, thanks a lot!
Best, Panos > Hi Panos > > so you want an intensity volume that is zero everywhere except in a > label? If so, try mri_mask > > cheers > Bruce > > On Mon, 28 Apr 2014, pfot...@nmr.mgh.harvard.edu wrote: > >> Hi FS experts, >> >> I was wondering what the best way to extract an ROI from an anatomical >> volume would be. For instance, I would like to create a volume of only >> the >> wm-lh-precentral based on the orig.mgz volume and on the segmentation >> map >> wmparc.mgz. I know that something similar can be done with the >> mri_extract_label command, but if I'm not mistaken that command can only >> be applied to a segmentation volume, and not on an anatomical volume >> like >> orig.mgz. >> >> Thanks in advance, >> Panos >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
