Hi Kristina are you running:
recon-all -autorecon2-cp -autorecon3 ... after adding control points and editing the wm? Bruce On Tue, 13 May 2014, Mayer Kristina wrote: > Dear all > > I am segmenting data of 2 year olds and as freesurfer fails on segmneting > inferior parts of the temporal lobe, I try to edit this manually using > tkmedit (protocol from fswiki: WhiteMatterEdits_tktools, PialEdits_tktools, > ControlPoints_tktools). > I first add control points, with successfull amelioration of brainmask > volumes. As this leads to integration of too much tissue in the white matter > surface (displayed as tkmedit brainmask.mgz -surfs), i tried to manually edit > wm.mgz. When I edit wm.mgz, there is no change in -surfs. When looking at the > data in tkmedit (tkmedit subjid wm.mgz -surfs), total WM surface (-surfs), > and wm.mgz are not the same. > > Where is the file generated that is shown in tkmedit as -surfs and which > volume/file do I have to edit to ameliorate output of -surfs? > > Best, Kristina > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
