Thanks Doug, I used the first link and works perfectly now! Best regards, Amirhossein Manzouri
On Tue, May 20, 2014 at 5:03 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > > I just ran it, and it works fine. It may be that I need to give you more > libraries. > > Start with this one > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/fsutils.py > > Copy it into $FREESURFER_HOME/bin (after making a backup of the original > one) > > If that still does not work, then copy this one > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/fsutils.pyc > > doug > > > > On 05/20/2014 04:36 AM, amirhossein manzouri wrote: > >> Dear Doug, >> Kindly find attached a sample of my lh.aparc.stats file! >> >> Best regards, >> Amirhossein Manzouri >> >> >> >> >> On Mon, May 19, 2014 at 7:59 PM, Douglas N Greve < >> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: >> >> Can you send me your lh.aparc.stats file? >> doug >> >> >> On 05/14/2014 01:41 PM, amirhossein manzouri wrote: >> >> >> Yes! >> >> >> On May 14, 2014 7:16 PM, "Douglas N Greve" >> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >> <mailto:gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu>>> wrote: >> >> >> Is the mean thickness in the ?h.aparc.stats file? >> Something like >> >> # Measure Cortex, MeanThickness, Mean Thickness, 2.27227, mm >> >> >> On 05/13/2014 05:18 PM, amirhossein manzouri wrote: >> >> Hi, >> The same result! the last is insula ! >> >> >> Best regards, >> Amirhossein Manzouri >> >> >> >> >> On Mon, May 12, 2014 at 5:05 PM, Douglas N Greve >> <gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu> >> <mailto:gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu>> >> <mailto:gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu> >> >> <mailto:gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu>>>> wrote: >> >> Try this version >> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/ >> greve/aparcstats2table >> >> >> >> On 05/12/2014 03:41 AM, amirhossein manzouri wrote: >> >> Hi again, >> I think I missed my question, How can I get >> the Mean >> Thickness >> of each hemisphere for several subjects using the >> aparcstats2table command? >> >> On Fri, May 9, 2014 at 4:28 PM, amirhossein >> manzouri >> <a.h.manzo...@gmail.com >> <mailto:a.h.manzo...@gmail.com> >> <mailto:a.h.manzo...@gmail.com >> <mailto:a.h.manzo...@gmail.com>> >> <mailto:a.h.manzo...@gmail.com <mailto:a.h.manzo...@gmail.com> >> <mailto:a.h.manzo...@gmail.com >> <mailto:a.h.manzo...@gmail.com>>> >> <mailto:a.h.manzo...@gmail.com >> <mailto:a.h.manzo...@gmail.com> >> <mailto:a.h.manzo...@gmail.com >> <mailto:a.h.manzo...@gmail.com>> >> <mailto:a.h.manzo...@gmail.com >> <mailto:a.h.manzo...@gmail.com> >> <mailto:a.h.manzo...@gmail.com >> <mailto:a.h.manzo...@gmail.com>>>>> wrote: >> >> Dear Doug, >> I have read this >> post( >> https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg25218.html >> ) >> regarding >> extracting Mean Cth of each hemisphere and >> I just get >> insula as >> the last and totally 34 numbers, I use >> aparcstats2table --hemi lh --subjects bert -m >> thickness >> --tablefile lh.Cth.bert.txt >> >> >> >> Best regards, >> Amirhossein Manzouri >> >> >> >> >> -- Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >> <mailto:gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu>> >> <mailto:gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu> >> >> <mailto:gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu>>> >> Phone Number: 617-724-2358 <tel:617-724-2358> >> <tel:617-724-2358 <tel:617-724-2358>> >> <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358 >> <tel:617-724-2358>>> >> Fax: 617-726-7422 <tel:617-726-7422> >> <tel:617-726-7422 <tel:617-726-7422>> <tel:617-726-7422 >> <tel:617-726-7422> >> >> <tel:617-726-7422 <tel:617-726-7422>>> >> >> >> Bugs: >> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> <http://surfer.nmr.mgh.harvard.edu/fswiki/ >> BugReporting> >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> <http://www.nmr.mgh.harvard. >> edu/facility/filedrop/index.html> >> <http://www.nmr.mgh.harvard. >> edu/facility/filedrop/index.html> >> Outgoing: >> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> >> >> The information in this e-mail is intended only >> for the >> person to >> whom it is >> addressed. If you believe this e-mail was sent to >> you in >> error and >> the e-mail >> contains patient information, please contact the >> Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent >> to >> you in error >> but does not contain patient information, please >> contact the >> sender and properly >> dispose of the e-mail. >> >> >> >> -- Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >> <mailto:gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu>> >> Phone Number: 617-724-2358 <tel:617-724-2358> >> <tel:617-724-2358 <tel:617-724-2358>> >> Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422 >> <tel:617-726-7422>> >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> Outgoing: >> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> >> -- Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >> Phone Number: 617-724-2358 <tel:617-724-2358> >> Fax: 617-726-7422 <tel:617-726-7422> >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> Outgoing: >> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> >> > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > >
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