Hi Sourav Can you explain exactly what you think is failing? Provide images in a couple of different views (coronal, sagittal) with arrows showing what you think is incorrect?
Cheers Bruce > On Jul 22, 2014, at 8:11 PM, SOURAV RANJAN KOLE <sourav.k...@utah.edu> wrote: > > Hi Bruce, > > I do not see any improvement in the skull stripping by decreasing the height. > I have also tried using the multistrip flag but I do not see any changes no > matter the height. Also, it seems that after watershed, it is not respecting > the manual edits that I have made as you can see in the Before_Watershed.png > attachment in my first email. > > Thank you for your help. > > Sourav > > > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl > [fis...@nmr.mgh.harvard.edu] > Sent: Tuesday, July 22, 2014 5:59 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] Watershed > > Hi Sourav > > can you explain what failed? Was too much removed? Too little? What did > you try to fix it? > Bruce >> On Tue, 22 Jul 2014, SOURAV RANJAN KOLE wrote: >> >> Hi Bruce, >> >> Thank you for your message. >> >> Yes, I rechecked the result and have tried it several times. It still seems >> to be not working. However, our lab has used the watershed flag previously >> and it had worked. Not sure what has changed. >> >> Thank you for your help. >> >> Sourav >> >> >> >> ________________________________________ >> From: freesurfer-boun...@nmr.mgh.harvard.edu >> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl >> [fis...@nmr.mgh.harvard.edu] >> Sent: Sunday, July 20, 2014 8:15 PM >> To: Freesurfer support list >> Cc: gr...@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] Watershed >> >> Hi Sourav >> Are you sure the skull stripping isn't working? It can be hard to tell right >> on the midline >> Cheers >> Bruce >> >>> On Jul 18, 2014, at 5:38 PM, SOURAV RANJAN KOLE <sourav.k...@utah.edu> >>> wrote: >>> >>> Sourav >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
