By using --sfmt curv and --tfmt curv you are saying that the input and
output formats are curv. But they are nifti. Try removing the --sfmt and
--tfmt (it will automatically detect that they are nifti)
doug
On 8/18/14 10:40 AM, Matthieu Vanhoutte wrote:
Dear experts,
I try to project on fsaverage CBF maps computed on surface, but when
trying to look at the mri_info of the output file
"meanCBF_0_s1.5asl.rem.mc.s6.fsaverage.lh.nii" I got this error :
*niiRead(): bad number of dimensions (13734) in
/home/matthieu/NAS/pierre/Epilepsy/FreeSurfer5.0/Patients_fmri_dti//Delforterie_Julien/asl_COR_PVEnew/meanCBF_0_s1.5asl.rem.mc.s6.fsaverage.lh.nii*
Here below the command lines used :
/
# CBF map //computed on surface
//# fsaverage & lh/
/
/
/mri_surf2surf --srcsubject Delforterie_Julien --srchemi lh
--srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh
--trgsurfreg sphere.reg --sval meanCBF_0_s1.5asl.rem.mc.s6.lh.nii
--sfmt curv --noreshape --no-cortex --tval
meanCBF_0_s1.5asl.rem.mc.s6.fsaverage.lh.nii --tfmt curv/
You can find data file joined to this mail.
Thanks in advance for helping !
Best regards,
-------------------------------------
Matthieu Vanhoutte, MSc
Research Engineer - Department of Neuroradiology
Regional University Hospital, Lille, France
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