> Bruce, > > By "symlink from your /mnt/hgfs/mydata/fsaverage to > /usr/local/freesurfer/subjects/fsaverage" you mean "ln -s > /mnt/hgfs/mydata/fsaverage /usr/local/freesurfer/subjects/fsaverage" ? > which fsaverage is the target ? > > Thanks, > Mahmoud >
The "target" fsaverage is the one that came with the installation. Which you no longer have so I have created a link for you to download it again and put it back in your $SUBJECTS_DIR (see next answer). > On Fri, Sep 19, 2014 at 9:50 AM, Mahmoud <[email protected]> wrote: > >> Bruce, >> >> Thank you for your follow up and advice. Please let me know: >> 1- How to download the fsaverage again? Ive created a link for you to download it: ftp://surfer.nmr.mgh.harvard.edu//pub/dist/freesurfer/dev_binaries/Linux_centos4_x86_64/fsaverage.tar.gz >> 2- should I do the symlink manually or it will be done by recon-all >> later ? Just extract the file above into your $SUBJECTS_DIR so that you have a $SUBJECTS_DIR/fsaverage directory and recon-all will take care of the rest. >> 3- What steps should I take before running the recon-all -all ? should I >> create any specific directory? set any permission ? None. Hopefully this will just work. -Zeke _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
